Is your favourite course or resource not listed here? If you find a problem please let us know. Any contribution to this collection is highly appreciated!
Welcome to the ERGA Knowledge Hub, an open, global home for Biodiversity Genomics teaching resources and courses curated by the European Reference Genome Atlas Community. Share your lectures, tutorials, workshop materials, other learning tools, or upcoming courses, workshops, and training events, in any language, and help us bridge borders. Want to know more? Check out our about page and introductory video
11 Resources
Page 1 / 1
Resource
Authors
Likes
Accessibility
Topics
Date
License
Interactive bcftools and bowtie2 tutorial: learn to use variant calling to decode a secret message stored in sequencing data using a command-line interface in your browser.
website
Authors
Robert Aboukhalil
Skill level
Intermediate
Languages
en
English
Variant analysis
Submission date
2025-08-14
License
-
Interactive jellyfish tutorial: learn to perform k-mer counting using a command-line interface in your browser.
website
Authors
Robert Aboukhalil
Skill level
Beginner
Languages
en
English
Genome assembly
Submission date
2025-08-14
License
-
Interactive BLAST tutorial: learn to align DNA and protein sequences using a command-line interface in your browser.
website
Authors
Shawn T. O’Neil
Skill level
Beginner
Languages
en
English
Genomics
Submission date
2025-08-14
License
Creative Commons Attribution 4.0 International
Interactive samtools tutorial: learn to filter and wrangle SAM and BAM files using a command-line interface in your browser.
website
Authors
Aaron Quinlan
Skill level
Beginner
Languages
en
English
Genomics
Submission date
2025-08-14
License
-
This lab will introduce you to the Integrative Genomics Viewer (IGV), one of the most popular visualization tools for High Throughput Sequencing (HTS) data.
website
Authors
Malachi Griffith, Sorana Morrissy, Jim Robinson, Ben Ainscough, Jason Walker, and Obi Griffith
Skill level
Beginner
Languages
en
English
Data visualization
Submission date
2025-08-14
License
-
Interactive bedtools tutorial: learn to wrangle BED files using a command-line interface in your browser.
website
Authors
Aaron Quinlan
Skill level
Beginner
Languages
en
English
Genomics
Submission date
2025-08-14
License
-
Interactive bash tutorial: learn to use the command line for bioinformatics data wrangling using a command-line interface in your browser.
website
Skill level
Intermediate
Languages
en
English
Unix/Linux
Submission date
2025-08-14
License
-
Interactive Bash tutorial: learn to write your own Bash scripts and process user inputs using a command-line interface in your browser.
website
Authors
Robert Aboukhalil
Skill level
Beginner
Languages
en
English
Unix/Linux
Submission date
2025-08-14
License
-
Interactive bash tutorial: learn to get up to speed using a command-line interface in your browser.
website
Authors
Robert Aboukhalil
Skill level
Beginner
Languages
en
English
Unix/Linux
Submission date
2025-08-14
License
-
Interactive bowtie2 tutorial: learn to align sequencing reads to a reference genome using a command-line interface in your browser.
website
Authors
Ben Langmead
Skill level
Beginner
Next generation sequencing
Submission date
2025-08-14
License
Other
Interactive fastp tutorial: learn to evaluate the quality of FASTQ files from a sequencing run using a command-line interface in your browser.
website
Authors
Robert Aboukhalil
Skill level
Beginner
Next generation sequencing
Quality Control
Submission date
2025-08-14
License
Other
Topics