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This repository contains course materials for a workshop on structural genome annotation with BRAKER and TSEBRA
Authors
Genome annotation
Days since last push
229
day(s)
2023-11-22
License
GNU General Public License v3.0
Authors
Genome assembly
Unix/Linux
High performance computing
Days since last push
468
day(s)
2023-03-28
License
GNU General Public License v3.0
Authors
Genomics
Variant analysis
Comparative genomics
Days since last push
998
day(s)
2021-10-14
License
Creative Commons Zero v1.0 Universal
Authors
Mark Ravinet, Joana Meier
Genomics
Variant analysis
Population genetics
Days since last push
-
License
MIT License
Authors
Hadrien Gourlé, Juliette Hayer, Oskar Karlsson, Jacques Dainat
High performance computing
Genomics
Genome assembly
Genome annotation
Next generation sequencing
Days since last push
-
License
Creative Commons Attribution 4.0
DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome Assembly is the process of reconstructing the original DNA sequence from the fragment reads alone.
Authors
Delphine Lariviere, Alex Ostrovsky, Cristóbal Gallardo, Anna Syme, Linelle Abueg, Brandon Pickett, Giulio Formenti, Marcella Sozzoni, Anton Nekrutenko
Galaxy
Genome assembly
Long read sequencing
Days since last push
-
License
Creative Commons Attribution 4.0
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
Authors
Anthony Bretaudeau
Genome annotation
Galaxy
Days since last push
-
License
Creative Commons Attribution 4.0
Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.
Authors
Anthony Bretaudeau
Galaxy
Genome annotation
Days since last push
-
License
Creative Commons Attribution 4.0
Genome bioinformatics: from short- to long-read sequencing materials 2023
Authors
Kayesha Coley, Chiara Batini, Charles Solomon, Maxime Tarabachi, Erik Garrison, Sean Laidlaw, Yo Yehudi, Daniel Thomas López, Louisse Mirabueno, Maira Ihsan, Dona Shaju
Next generation sequencing
Long read sequencing
Variant analysis
Reproducibility
Data management
Days since last push
-
License
Creative Commons Attribution 4.0
https://BGA23.org/MitoHiFiAssembling Mitogenomes from PacBio HiFi reads using MitoHiFiThis session is part of Biodiversity Genomics Academy 2023Session Leade...
Authors
Marcela Uliano-Silva
Genomics
Genome assembly
Long read sequencing
Days since last push
-
License
Standard Youtube License
https://bga23.org/genomescopeGenome profiling using GenomeScopeThis session is part of Biodiversity Genomics Academy 2023Session Leader(s)Lucía Campos-Domíng...
Authors
Lucía Campos-Domínguez
Kamil Jaron
Kamil Jaron
Genomics
Days since last push
-
License
Standard Youtube License
Authors
Yannis Nevers
Genomics
Genome annotation
Comparative genomics
Days since last push
-
License
Standard Youtube License
Authors
Cath Brooksbank
Andrew Cowley
Andrew Cowley
Data submission
Database Management
Days since last push
-
License
Creative Commons Attribution 4.0
Authors
Data management
FAIR data
Reproducibility
Days since last push
-
License
Creative Commons Attribution 4.0
Authors
Emily Perry
Benjamin Moore
Helen Sparrow
Giulietta M. Spudich
Aleena Mushtaq
Genome annotation
Database Management
Days since last push
-
License
Creative Commons Attribution 4.0
Authors
Sam Holt
Clara Amid
Maira Ihsan
Data management
Data submission
Days since last push
-
License
Creative Commons Attribution 4.0
Authors
Laura Emery
Phylogenetics / Phylogenomics
Days since last push
-
License
Creative Commons Attribution 4.0
Authors
Conservation genomics
Genomics
Next generation sequencing
Population genetics
Days since last push
-
License
Standard Youtube License
RNA sequencing (RNAseq) is a powerful technique for investigating gene expression in biological samples. Processing and analysing RNAseq data involves multip...
Authors
Dr Nandan Deshpande
RNA-seq
Next generation sequencing
Genome annotation
Days since last push
-
License
Creative Commons Attribution 4.0
Life scientists are increasingly using whole genome sequencing (WGS) to ask and answer research questions across the tree of life. Before any of this work ca...
Authors
Dr Georgina Samaha
Genomics
Variant analysis
Days since last push
-
License
Creative Commons Attribution 4.0
Authors
Genomics
Next generation sequencing
Unix/Linux
Data management
RNA-seq
Variant analysis
Days since last push
-
License
GNU General Public License v3.0
The talk starts at 00:06:30. This session was held as part of the webinar series "A Primer on Science Policy for Biodiversity Research" co-hosted by the Glob...
Authors
Scarlett Sett
ABS
Nagoya
Days since last push
-
License
Standard Youtube License
Authors
Evanson Chege Kamau
Nagoya
ABS
Days since last push
-
License
Creative Commons Attribution 4.0
What does compliance with access and benefit-sharing (ABS) rules mean and why is it important?
What happens if you don't comply with ABS rules? Find out in this video.
Authors
German Nagoya Protocol HuB
ABS
Nagoya
Days since last push
-
License
Standard Youtube License
Authors
ABS Biotrade
ABS
Days since last push
-
License
Standard Youtube License
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