Welcome to the ERGA Knowledge Hub, an open, global home for Biodiversity Genomics teaching resources and courses curated by the European Reference Genome Atlas Community. Share your lectures, tutorials, workshop materials, other learning tools, or upcoming courses, workshops, and training events, in any language, and help us bridge borders. Want to know more? Check out our about page and introductory video

28 Resources

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EMBO 24 Genome Sequencing Course
Authors
Genomics Genome assembly Galaxy Long read sequencing
Last updated
2025-09-12
License
-
ebp-nor/workshop-2024
Authors
Genome annotation Genome assembly Comparative genomics
Last updated
2025-08-21
License
Creative Commons Attribution 4.0 International
Biodiversity Genomics Europe; SciLifeLab Hi-C Course - BGE + SciLifeLab Hi-C Course
Authors
Morten Skage, Irene Fabiola Roman Maldonado, Karine Labadie , Fernando Cruz Rodriguez, Graeme Oatley, Simona Buonanno, Lorenzo Ballini, Leonardo Girlanda and Annunziata De Luisi.
Skill level
Beginner
Genomics Epigenetics Long read sequencing
Submission date
2025-08-14
License
Creative Commons Attribution 4.0 International
K-mer counting with Jellyfish - sandbox.bio
Interactive jellyfish tutorial: learn to perform k-mer counting using a command-line interface in your browser.
Authors
Robert Aboukhalil
Skill level
Beginner
Languages
en
English
Genome assembly
Submission date
2025-08-14
License
-
e-Aulas da USP :: Aula 6 parte 3, Sequenciamento de Nova Geração
Authors
Felipe Jun Fuzita
Next generation sequencing
Submission date
2025-08-14
License
-
Sequence alignment with bowtie2 - sandbox.bio
Interactive bowtie2 tutorial: learn to align sequencing reads to a reference genome using a command-line interface in your browser.
Authors
Ben Langmead
Skill level
Beginner
Next generation sequencing
Submission date
2025-08-14
License
Other
DNA sequencing QC - sandbox.bio
Interactive fastp tutorial: learn to evaluate the quality of FASTQ files from a sequencing run using a command-line interface in your browser.
Authors
Robert Aboukhalil
Skill level
Beginner
Next generation sequencing Quality Control
Submission date
2025-08-14
License
Other
rmwaterhouse/ERGA-Bitesize-BUSCO-genome
Genomics Quality Control with BUSCO - Genome Mode
Authors
Skill level
Beginner
Languages
en
English
Assembly Evaluation Quality Control
Last updated
2025-08-06
License
Creative Commons Attribution 4.0 International
BUSCO - from QC to gene prediction and phylogenomics
By the end of this session you will be able to: Understand the main uses of BUSCO in genomics Understand how BUSCO operates behind the scenes Run example assessments of genomic data with BUSCO Navigate your way around the main BUSCO outputs
Authors
Assembly Evaluation Genome annotation
Last updated
2025-08-06
License
MIT License
NGS-CN Summer School 2024
Welcome to the NGS-CN Summer School, where we’re excited to bring you fundamentals into sequencing techniques and its transformative impact on genomic resear...
Authors
Next Generation Sequencing Competence Network
Next generation sequencing Transcriptomics Genomics RNA-seq Long read sequencing
Submission date
2025-04-08
License
Standard Youtube License
Explain Podcast; West German Genome Center (WGGC)
The Explain Podcast is for everyone interested in DNA/RNA sequencing or technology.
Authors
Iuliia Novoselova and Daniel Rickert
Next generation sequencing Genomics Long read sequencing RNA-seq
Submission date
2025-04-01
License
-
ccgproject/ccgp_assembly
CCGP Repository for the genome assembly working group.
Authors
Genome assembly Conservation genomics Unix/Linux Next generation sequencing
Last updated
2025-03-27
License
-
NGS - Quality control, Alignment, Visualisation - SIB Training
The playlist gathers the videos recorded during the SIB course “NGS - Quality Control, Alignment, Visualisation” streamed on 21-24 November 2023. In this mod...
Authors
Geert van Geest
Skill level
Beginner
Next generation sequencing Database Management Data visualization Genomics
Submission date
2025-03-24
License
Creative Commons Attribution 4.0 International
k-mer approaches for biodiversity genomics
k-mer learning materials
Authors
Genomics Genome assembly Assembly Evaluation Quality Control
Last updated
2025-02-14
License
-
Course content | Plant genomes: from data to discovery
Plant genomes: from data to discovery
Genomics Data management Data submission Variant analysis Transcriptomics FAIR data Assembly Evaluation
Submission date
2024-12-16
License
Creative Commons Attribution 4.0 International
NGS CN Summer School 2024 - Talk 2 - Starting a Sequencing Project - YouTube
NGS-CN Summer School 2024 | Starting a Sequencing ProjectWelcome to the NGS-CN Summer School, where we’re excited to bring you fundamentals into sequencing t...
Authors
Oleksandra Karpiuk
Next generation sequencing Sampling Protocols
Last updated
2024-12-09
License
Standard Youtube License
NGS-CN Summer School 2024 - Talk 1 - Sequencing Technologies at a glance - YouTube
NGS-CN Summer School 2024 | Sequencing Technologies & BioinformaticsWelcome to the NGS-CN Summer School, where we’re excited to bring you fundamentals into s...
Authors
Maximilian Krause
Next generation sequencing Genomics
Last updated
2024-11-08
License
Standard Youtube License
Manual curation of bird microchromosomes with HiC and gene mapping
Bird microchromosome assembly curation workshop slides and resources. Originally presented at The BioDiversity Genomics Academy 2024.  YouTube recording of the workshop live stream: https://www.youtube.com/live/GhtXoVwETkY?si=GloMcUbDdLahXhdA.  Maps_and_savestates.tar.gz contains Pretext HiC maps and savestates used in the workshop. 
Authors
Mathers, Thomas; Paulini, Michael; Collins, Joanna; Absolon, Dominic; Pelan, Sarah; Wood, Jonathan
Assembly Curation
Submission date
2024-10-15
License
Creative Commons Attribution 4.0 International
A method for assembling the genome of a non-model organism | Earlham Institute
A walk-through of a manual curation technique for genome assembly
Authors

Camilla Ryan
Genome assembly Assembly Curation Genomics
Submission date
2024-08-23
License
-
Introduction to Long-Read Data Analysis
Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
Authors
Tim Kahlke
Genome assembly Long read sequencing
Submission date
2024-06-17
License
GNU General Public License v3.0
Hands-on: Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step / Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step / Assembly
DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome Assembly is the process of reconstructing the original DNA sequence from the fragment reads alone.
Authors
Delphine Lariviere, Alex Ostrovsky, Cristóbal Gallardo, Anna Syme, Linelle Abueg, Brandon Pickett, Giulio Formenti, Marcella Sozzoni, Anton Nekrutenko
Galaxy Genome assembly Long read sequencing
Submission date
2024-06-04
License
Creative Commons Attribution 4.0 International
SBGC Bioinformatics Course
Authors
Hadrien Gourlé, Juliette Hayer, Oskar Karlsson, Jacques Dainat
High performance computing Genomics Genome assembly Genome annotation Next generation sequencing
Submission date
2024-06-03
License
Creative Commons Attribution 4.0 International
Caltech BI/BE/CSS 183: Introduction to Computational Biology and Bioinformatics
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
Authors
RNA-seq Single-cell sequencing Statistics Machine learning Data science
Last updated
2024-01-05
License
Other
Assembling Mitogenomes from PacBio HiFi reads using MitoHiFi - YouTube
https://BGA23.org/MitoHiFiAssembling Mitogenomes from PacBio HiFi reads using MitoHiFiThis session is part of Biodiversity Genomics Academy 2023Session Leade...
Authors
Marcela Uliano-Silva
Genomics Genome assembly Long read sequencing
Last updated
2023-09-14
License
Standard Youtube License
Getting started with RNAseq: Transforming raw reads into biological insights - YouTube
RNA sequencing (RNAseq) is a powerful technique for investigating gene expression in biological samples. Processing and analysing RNAseq data involves multip...
Authors
Dr Nandan Deshpande
RNA-seq Next generation sequencing Genome annotation
Last updated
2023-09-07
License
Creative Commons Attribution 4.0 International

About

The ERGA Knowledge Hub is a catalogue of training materials and resources related to biomaterial sampling, reference genome generation, analysis, teaching, outreach, and legal and ethical aspects, curated by the European Reference Genome Atlas. It also features upcoming and completed training events and courses on topics relevant to the ERGA community. All material is submitted and curated by the ERGA Community, and is free to use with accreditation.

This initiative was made possible thanks to the Biodiversity Genomics Europe (BGE) project, funded by the European Union under the Horizon Europe research and innovation program, co-funded by the Swiss and British governments.

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Data last updated: 2025-10-01 13:07:48

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