Welcome to the ERGA Knowledge Hub, an open, global home for Biodiversity Genomics teaching resources and courses curated by the European Reference Genome Atlas Community. Share your lectures, tutorials, workshop materials, other learning tools, or upcoming courses, workshops, and training events, in any language, and help us bridge borders. Want to know more? Check out our about page and introductory video

38 Resources

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Hands-on: Assembly of the mitochondrial genome from PacBio HiFi reads / Assembly of the mitochondrial genome from PacBio HiFi reads / Assembly
DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome Assembly is the process of reconstructing the original DNA sequence from the fragment reads alone.
Authors
Delphine Lariviere
Skill level
Beginner
Languages
en
English
Genome assembly
Submission date
2026-08-21
License
Creative Commons Attribution 4.0 International
Hands-on: Chloroplast genome assembly / Chloroplast genome assembly / Assembly
DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome Assembly is the process of reconstructing the original DNA sequence from the fragment reads alone.
Authors
Anna Syme
Skill level
Beginner
Languages
en
English
Genome assembly Genome annotation
Submission date
2026-08-21
License
Creative Commons Attribution 4.0 International
Hands-on: Decontamination of a genome assembly / Decontamination of a genome assembly / Assembly
DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome Assembly is the process of reconstructing the original DNA sequence from the fragment reads alone.
Authors
Delphine Lariviere
Skill level
Beginner
Quality Control
Submission date
2026-08-21
License
Creative Commons Attribution 4.0 International
Hands-on: ERGA post-assembly QC / ERGA post-assembly QC / Assembly
DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome Assembly is the process of reconstructing the original DNA sequence from the fragment reads alone.
Authors
Fabian Recktenwald, Cristóbal Gallardo, Tom Brown, Delphine Lariviere
Skill level
Beginner
Languages
en
English
Quality Control
Submission date
2026-08-21
License
Creative Commons Attribution 4.0 International
filonico/UNIX_and_bash_basics
This repository contains bash basics and other useful resources intended for beginner bioinformaticians 🐧💲
Authors
Skill level
Beginner
Languages
en
English
Unix/Linux
Last updated
2026-08-18
License
-
Course: Data Literacy in Plant Sciences
Introduction to data literacy and plant genomics
Authors
Skill level
Beginner
Languages
en
English
Data management Next generation sequencing Long read sequencing Genome assembly Genomics Genome annotation Comparative genomics
Last updated
2026-06-07
License
-
ebp-nor/workshop-2024
Authors
Genome annotation Genome assembly Comparative genomics
Last updated
2026-03-26
License
Creative Commons Attribution 4.0 International
GALORE Genomics and Long Reads Education
Contains resources for the Genomics and Long Reads Education developed by the Chakraborty Lab
Authors
Skill level
Beginner
Languages
en
English
Genome assembly Assembly Evaluation Unix/Linux Genomics Variant analysis High performance computing Long read sequencing Quality Control
Last updated
2026-03-05
License
GNU General Public License v3.0
Introduction to the Command Line for Genomics: Summary and Setup
Authors
Erin Alison Becker, Anita Schürch, Tracy Teal, Sheldon John McKay, Jessica Elizabeth Mizzi, François Michonneau
Skill level
Beginner
Languages
en
English
Unix/Linux Database Management High performance computing
Submission date
2026-02-23
License
Creative Commons Attribution 4.0 International
Universidad Complutense de Madrid
La mayor universidad presencial de España, con la mejor oferta educativa. En Madrid, rodeada de zonas verdes y con una intensa vida cultural y deportiva.
Skill level
Intermediate
Languages
en
English
Genome assembly Metagenomics
Submission date
2026-02-11
License
Other
bpucker/MolecularMethodsInGenomeResearch
practical course about lab methods in genome research
Authors
Skill level
Beginner
Next generation sequencing
Last updated
2026-02-07
License
MIT License
Caltech BI/BE/CSS 183: Introduction to Computational Biology and Bioinformatics
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
Authors
RNA-seq Single-cell sequencing Statistics Machine learning Data science
Last updated
2026-01-14
License
Other
rmwaterhouse/ERGA-Bitesize-BUSCO-genome
Genomics Quality Control with BUSCO - Genome Mode
Authors
Skill level
Beginner
Languages
en
English
Assembly Evaluation Quality Control
Last updated
2025-11-24
License
Creative Commons Attribution 4.0 International
EMBO 24 Genome Sequencing Course
Authors
Genomics Genome assembly Galaxy Long read sequencing
Last updated
2025-09-12
License
-
Biodiversity Genomics Europe; SciLifeLab Hi-C Course - BGE + SciLifeLab Hi-C Course
Authors
Morten Skage, Irene Fabiola Roman Maldonado, Karine Labadie , Fernando Cruz Rodriguez, Graeme Oatley, Simona Buonanno, Lorenzo Ballini, Leonardo Girlanda and Annunziata De Luisi.
Skill level
Beginner
Genomics Epigenetics Long read sequencing
Submission date
2025-08-14
License
Creative Commons Attribution 4.0 International
K-mer counting with Jellyfish - sandbox.bio
Interactive jellyfish tutorial: learn to perform k-mer counting using a command-line interface in your browser.
Authors
Robert Aboukhalil
Skill level
Beginner
Languages
en
English
Genome assembly
Submission date
2025-08-14
License
-
e-Aulas da USP :: Aula 6 parte 3, Sequenciamento de Nova Geração
Authors
Felipe Jun Fuzita
Next generation sequencing
Submission date
2025-08-14
License
-
Sequence alignment with bowtie2 - sandbox.bio
Interactive bowtie2 tutorial: learn to align sequencing reads to a reference genome using a command-line interface in your browser.
Authors
Ben Langmead
Skill level
Beginner
Next generation sequencing
Submission date
2025-08-14
License
Other
DNA sequencing QC - sandbox.bio
Interactive fastp tutorial: learn to evaluate the quality of FASTQ files from a sequencing run using a command-line interface in your browser.
Authors
Robert Aboukhalil
Skill level
Beginner
Next generation sequencing Quality Control
Submission date
2025-08-14
License
Other
BUSCO - from QC to gene prediction and phylogenomics
By the end of this session you will be able to: Understand the main uses of BUSCO in genomics Understand how BUSCO operates behind the scenes Run example assessments of genomic data with BUSCO Navigate your way around the main BUSCO outputs
Authors
Assembly Evaluation Genome annotation
Last updated
2025-08-06
License
MIT License
NGS-CN Summer School 2024
Authors
Next Generation Sequencing Competence Network
Next generation sequencing Transcriptomics Genomics RNA-seq Long read sequencing
Submission date
2025-04-08
License
Standard Youtube License
Explain Podcast; West German Genome Center (WGGC)
The Explain Podcast is for everyone interested in DNA/RNA sequencing or technology.
Authors
Iuliia Novoselova and Daniel Rickert
Next generation sequencing Genomics Long read sequencing RNA-seq
Submission date
2025-04-01
License
-
ccgproject/ccgp_assembly
CCGP Repository for the genome assembly working group.
Authors
Genome assembly Conservation genomics Unix/Linux Next generation sequencing
Last updated
2025-03-27
License
-
NGS - Quality control, Alignment, Visualisation - SIB Training
Authors
Geert van Geest
Skill level
Beginner
Next generation sequencing Database Management Data visualization Genomics
Submission date
2025-03-24
License
Creative Commons Attribution 4.0 International
k-mer approaches for biodiversity genomics
k-mer learning materials
Authors
Genomics Genome assembly Assembly Evaluation Quality Control
Last updated
2025-02-14
License
-

About

The ERGA Knowledge Hub is a catalogue of training materials and resources related to biomaterial sampling, reference genome generation, analysis, teaching, outreach, and legal and ethical aspects, curated by the European Reference Genome Atlas. It also features upcoming and completed training events and courses on topics relevant to the ERGA community. All material is submitted and curated by the ERGA Community, and is free to use with accreditation.

This initiative was made possible thanks to the Biodiversity Genomics Europe (BGE) project, funded by the European Union under the Horizon Europe research and innovation program, co-funded by the Swiss and British governments.

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Developed, maintained and curated by:

Yann Haefliger
Tom Brown
Diego De Panis
Luísa Marins
Christian de Guttry

Data last updated: 2026-08-22 01:05:15

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