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Welcome to the ERGA Knowledge Hub - this is an open and global collection of educational resources in biodiversity genomics curated by the European Reference Genome Atlas Community. Submit and share resources to join our mission breaking down geographical barriers and facilitating knowledge transfer.
16 Resources
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Type
Resource
Authors
Topics
Last updated
License
Genome assembly
Conservation genomics
Unix/Linux
Next generation sequencing
Days since last push
58
day(s)
2024-10-28
License
-
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
Authors
RNA-seq
Single-cell sequencing
Statistics
Machine learning
Data science
Days since last push
356
day(s)
2024-01-05
License
Other
By the end of this session you will be able to:
Understand the main uses of BUSCO in genomics
Understand how BUSCO operates behind the scenes
Run example assessments of genomic data with BUSCO
Navigate your way around the main BUSCO outputs
Assembly Evaluation
Genome annotation
Days since last push
457
day(s)
2023-09-26
License
MIT License
Explore the world of genome assembly and gain an understanding of the power and pitfalls of sequencing technologies and assembly techniques.
Genome assembly
Genomics
Long read sequencing
High performance computing
Next generation sequencing
Days since last push
624
day(s)
2023-04-12
License
Creative Commons Zero v1.0 Universal
Authors
Genome assembly
Unix/Linux
High performance computing
Days since last push
639
day(s)
2023-03-28
License
GNU General Public License v3.0
Authors
Hadrien Gourlé, Juliette Hayer, Oskar Karlsson, Jacques Dainat
High performance computing
Genomics
Genome assembly
Genome annotation
Next generation sequencing
Days since last push
-
License
Creative Commons Attribution 4.0
DNA sequence data has become an indispensable tool for Molecular Biology & Evolutionary Biology. Study in these fields now require a genome sequence to work from. We call this a 'Reference Sequence.' We need to build a reference for each species. We do this by Genome Assembly. De novo Genome Assembly is the process of reconstructing the original DNA sequence from the fragment reads alone.
Authors
Delphine Lariviere, Alex Ostrovsky, Cristóbal Gallardo, Anna Syme, Linelle Abueg, Brandon Pickett, Giulio Formenti, Marcella Sozzoni, Anton Nekrutenko
Galaxy
Genome assembly
Long read sequencing
Days since last push
-
License
Creative Commons Attribution 4.0
https://BGA23.org/MitoHiFiAssembling Mitogenomes from PacBio HiFi reads using MitoHiFiThis session is part of Biodiversity Genomics Academy 2023Session Leade...
Authors
Marcela Uliano-Silva
Genomics
Genome assembly
Long read sequencing
Days since last push
-
License
Standard Youtube License
RNA sequencing (RNAseq) is a powerful technique for investigating gene expression in biological samples. Processing and analysing RNAseq data involves multip...
Authors
Dr Nandan Deshpande
RNA-seq
Next generation sequencing
Genome annotation
Days since last push
-
License
Creative Commons Attribution 4.0
Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
Authors
Tim Kahlke
Genome assembly
Long read sequencing
Days since last push
-
License
GNU General Public License v3.0
A walk-through of a manual curation technique for genome assembly
Authors
Camilla Ryan
Genome assembly
Assembly Curation
Genomics
Days since last push
-
License
-
Bird microchromosome assembly curation workshop slides and resources. Originally presented at The BioDiversity Genomics Academy 2024. YouTube recording of the workshop live stream: https://www.youtube.com/live/GhtXoVwETkY?si=GloMcUbDdLahXhdA. Maps_and_savestates.tar.gz contains Pretext HiC maps and savestates used in the workshop.
Authors
Mathers, Thomas; Paulini, Michael; Collins, Joanna; Absolon, Dominic; Pelan, Sarah; Wood, Jonathan
Assembly Curation
Days since last push
-
License
Creative Commons Attribution 4.0
NGS-CN Summer School 2024 | Starting a Sequencing ProjectWelcome to the NGS-CN Summer School, where we’re excited to bring you fundamentals into sequencing t...
Authors
Oleksandra Karpiuk
Next generation sequencing
Sampling Protocols
Days since last push
-
License
Standard Youtube License
NGS-CN Summer School 2024 | Sequencing Technologies & BioinformaticsWelcome to the NGS-CN Summer School, where we’re excited to bring you fundamentals into s...
Authors
Maximilian Krause
Next generation sequencing
Genomics
Days since last push
-
License
Standard Youtube License
Authors
Genomics
Data management
Data submission
Variant analysis
Transcriptomics
FAIR data
Assembly Evaluation
Days since last push
-
License
Creative Commons Attribution 4.0
Every year, the students attending Introduction to Bioinformatics have the opportunity to listen to experts working in this field.In the second session, Tyle...
Authors
Tyler Alioto
Genomics
Genome annotation
Genome assembly
Days since last push
-
License
Standard Youtube License
Topics