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Welcome to the ERGA Knowledge Hub, an open, global home for Biodiversity Genomics teaching resources and courses curated by the European Reference Genome Atlas Community. Share your lectures, tutorials, workshop materials, other learning tools, or upcoming courses, workshops, and training events, in any language, and help us bridge borders. Want to know more? Check out our about page and introductory video
43 Resources
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Date
License
biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
github
Authors
Genomics
Next generation sequencing
Comparative genomics
Population genetics
Phylogenetics / Phylogenomics
Last updated
2025-11-21
License
-
Contains resources for the Genomics and Long Reads Education developed by the Chakraborty Lab
github
Authors
Skill level
Beginner
Languages
en
English
Genome assembly
Assembly Evaluation
Unix/Linux
Genomics
Variant analysis
High performance computing
Long read sequencing
Quality Control
Last updated
2025-11-19
License
GNU General Public License v3.0
EMBL-EBI Train online course
website
Authors
Fergal Martin, Ajay Mishra, Flaminia Zane, Alexander Leonard
Skill level
Beginner
Languages
en
English
Pangenomes
Submission date
2025-10-09
License
Creative Commons Attribution 4.0 International
These lectures are from Fall 2018. Please find the Fall 2019 version here: https://www.youtube.com/playlist?list=PLypiXJdtIca6U5uQOCHjP9Op3gpa177fK
youtube
Skill level
Intermediate
Languages
en
English
Genomics
Phylogenetics / Phylogenomics
Population genetics
Database Management
Genome assembly
Submission date
2025-09-04
License
Standard Youtube License
Interactive bcftools and bowtie2 tutorial: learn to use variant calling to decode a secret message stored in sequencing data using a command-line interface in your browser.
website
Authors
Robert Aboukhalil
Skill level
Intermediate
Languages
en
English
Variant analysis
Submission date
2025-08-14
License
-
Interactive BLAST tutorial: learn to align DNA and protein sequences using a command-line interface in your browser.
website
Authors
Shawn T. O’Neil
Skill level
Beginner
Languages
en
English
Genomics
Submission date
2025-08-14
License
Creative Commons Attribution 4.0 International
This lab will introduce you to the Integrative Genomics Viewer (IGV), one of the most popular visualization tools for High Throughput Sequencing (HTS) data.
website
Authors
Malachi Griffith, Sorana Morrissy, Jim Robinson, Ben Ainscough, Jason Walker, and Obi Griffith
Skill level
Beginner
Languages
en
English
Data visualization
Submission date
2025-08-14
License
-
Category index
website
Authors
Malachi Griffith, Jason R. Walker, Nicholas C. Spies, Benjamin J. Ainscough, Obi L. Griffith
Skill level
Beginner
Languages
en
English
RNA-seq
Genome annotation
Transcriptomics
Genome assembly
Submission date
2025-08-14
License
Creative Commons Attribution Share Alike 4.0
Interactive bedtools tutorial: learn to wrangle BED files using a command-line interface in your browser.
website
Authors
Aaron Quinlan
Skill level
Beginner
Languages
en
English
Genomics
Submission date
2025-08-14
License
-
Interactive bash tutorial: learn to get up to speed using a command-line interface in your browser.
website
Authors
Robert Aboukhalil
Skill level
Beginner
Languages
en
English
Unix/Linux
Submission date
2025-08-14
License
-
Interactive bowtie2 tutorial: learn to align sequencing reads to a reference genome using a command-line interface in your browser.
website
Authors
Ben Langmead
Skill level
Beginner
Next generation sequencing
Submission date
2025-08-14
License
Other
By the end of this session you will be able to:
Understand the main uses of BUSCO in genomics
Understand how BUSCO operates behind the scenes
Run example assessments of genomic data with BUSCO
Navigate your way around the main BUSCO outputs
github
Assembly Evaluation
Genome annotation
Last updated
2025-08-06
License
MIT License
Authors
Tobias Rausch
Skill level
Beginner
Languages
en
English
Variant analysis
Submission date
2025-08-06
License
Creative Commons Attribution 4.0 International
Authors
Melissa Burke, Laura Huerta
Skill level
Beginner
Languages
en
English
Functional Genomics
Reproducibility
Genomics
Submission date
2025-08-06
License
Creative Commons Attribution 4.0 International
Authors
Melanie LaCava, Alicia Mastretta-Yanes, Isaac Overcast, Jon Puritz, Jeffrey Good, Mikhail “Misha” Matz, Noah Reid, Tim Sackton, Nina Overgaard Therkildsen, Zach Gompert, Morgan Kelly, Katie Lotterhos, Jeff Ross-Ibarra, Ana Conesa, Sarah Davies, Martin Hölzer, Joanna Kelley, Harold Pimentel.
Genomics
RNA-seq
Population genetics
Transcriptomics
Submission date
2025-08-01
License
Standard Youtube License
Training material for all kinds of transcriptomics analysis.
website
Authors
Bérénice Batut Mallory Freeberg Mo Heydarian Anika Erxleben Pavankumar Videm Clemens Blank Maria Doyle Nicola Soranzo Peter van Heusden Lucille Delisle
Skill level
Beginner
RNA-seq
Transcriptomics
Quality Control
Genomics
Submission date
2025-08-01
License
Creative Commons Attribution 4.0 International
Authors
Nicolas Lapalu, Antoine Malet, Alexis Mergez , Benjamin Linard, Ludovic Duvaux
Genome assembly
Pangenomes
Submission date
2025-03-28
License
Creative Commons Attribution-NonCommercial-ShareAlike 4.0
This collection of videos was recorded live during the SIB course “Docker and Singularity for reproducible research: getting started with containers” streame...
website
Authors
Dr. Geert van Geest
Docker
Singularity
Submission date
2025-03-24
License
Creative Commons Attribution 4.0 International
The playlist gathers the videos recorded during the SIB course “NGS - Genome Variant Analysis” streamed on 05-06 Sep 2023. In this two-day course we will cov...
website
Authors
Geert van Geest
Variant analysis
Genome annotation
Submission date
2025-03-24
License
Creative Commons Attribution 4.0 International
Authors
Laura Huerta, Melissa Burke, Flaminia Zane
Functional Genomics
Genomics
Next generation sequencing
RNA-seq
Pathways and Networks
Epigenetics
Submission date
2025-03-24
License
Creative Commons Attribution-NonCommercial 4.0
The Armenian Bioinformatics Institute (ABI, https://abi.am), in collaboration with the Bioinformatics Group at the Institute of Molecular Biology (IMB) NAS RA, has initiated an annual series of summer schools in genome bioinformatics. To extend the reach of these efforts, we have compiled the materials from these schools into this guide.
This guide provides you with the foundational knowledge and skills needed to embark on your first bioinformatics project. While this is not an exhaustive resource, it serves as a starting point, equipping you with the tools and inspiration to pursue further education in this dynamic field
website
Authors
Aleksey Kurnosov, Vahan Huroyan, Susanna Avagyan, Maria Nikoghosyan, Lilit Nersisyan
R
Python
RNA-seq
Genomics
Submission date
2025-02-20
License
Other open
Authors
Genomics
Genome assembly
Assembly Evaluation
Quality Control
Last updated
2025-02-14
License
-
Authors
Skill level
Beginner
Languages
en
English
Unix/Linux
R
Python
Statistics
Last updated
2025-01-08
License
MIT License
CGR helps maximize the full potential of eukaryotic research organisms and their genomic data through community collaboration, and an NCBI Toolkit of interco...
website
Authors
National Library of Medicine
Comparative genomics
Submission date
2024-12-16
License
Standard Youtube License
Plant genomes: from data to discovery
website
Genomics
Data management
Data submission
Variant analysis
Transcriptomics
FAIR data
Assembly Evaluation
Submission date
2024-12-16
License
Creative Commons Attribution 4.0 International
Topics