Welcome to the ERGA Knowledge Hub - this is an open and global collection of educational resources in biodiversity genomics curated by the European Reference Genome Atlas Community. Submit and share resources to join our mission breaking down geographical barriers and facilitating knowledge transfer.

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biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
Genomics Next generation sequencing Comparative genomics Population genetics Phylogenetics / Phylogenomics
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82 day(s)
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By the end of this session you will be able to: Understand the main uses of BUSCO in genomics Understand how BUSCO operates behind the scenes Run example assessments of genomic data with BUSCO Navigate your way around the main BUSCO outputs
Assembly Evaluation Genome annotation
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572 day(s)
License
MIT License
A set of notes collected by the Coop lab in the area of Population Genetics
Authors
Population genetics
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689 day(s)
License
MIT License
Genomics Variant analysis Comparative genomics
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1284 day(s)
License
Creative Commons Zero v1.0 Universal
Authors
Mark Ravinet, Joana Meier
Genomics Variant analysis Population genetics
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-
License
MIT License
Genome bioinformatics: from short- to long-read sequencing
Authors
Kayesha Coley, Chiara Batini, Charles Solomon, Maxime Tarabachi, Erik Garrison, Sean Laidlaw, Yo Yehudi, Daniel Thomas López, Louisse Mirabueno, Maira Ihsan, Dona Shaju
Next generation sequencing Long read sequencing Variant analysis Reproducibility Data management
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License
Creative Commons Attribution 4.0
https://bga23.org/genomescopeGenome profiling using GenomeScopeThis session is part of Biodiversity Genomics Academy 2023Session Leader(s)Lucía Campos-Domíng...
Authors
Lucía Campos-Domínguez
Kamil Jaron
Genomics
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License
Standard Youtube License
EMBL-EBI Train online course
Authors
Cath Brooksbank
Andrew Cowley
Data submission Database Management
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License
Creative Commons Attribution 4.0
EMBL-EBI Train online course
Authors

Emily Perry
Benjamin Moore
Helen Sparrow
Giulietta M. Spudich
Aleena Mushtaq
Genome annotation Database Management
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License
Creative Commons Attribution 4.0
EMBL-EBI Train online course
Authors
Laura Emery
Phylogenetics / Phylogenomics
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-
License
Creative Commons Attribution 4.0
Authors
Conservation genomics Genomics Next generation sequencing Population genetics
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License
Standard Youtube License
Life scientists are increasingly using whole genome sequencing (WGS) to ask and answer research questions across the tree of life. Before any of this work ca...
Authors
Dr Georgina Samaha
Genomics Variant analysis
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-
License
Creative Commons Attribution 4.0
Authors
Genomics Next generation sequencing Unix/Linux Data management RNA-seq Variant analysis
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License
GNU General Public License v3.0
Authors
Michael Charleston
Phylogenetics / Phylogenomics
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License
Creative Commons Attribution 4.0
Authors
Thiago Genez, Chiara Bortoluzzi
Genomics
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License
Standard Youtube License
Authors
Erik Garrison, Andrea Guarracino
Genomics Comparative genomics
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License
Creative Commons Attribution 4.0
Plant genomes: from data to discovery
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Genomics Data management Data submission Variant analysis Transcriptomics FAIR data Assembly Evaluation
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License
Creative Commons Attribution 4.0
This is a detailed tutorial showing how to start with a human protein, find a set of Cetacean orthologs, align the protein sequences, and explore amino acids...
Authors
National Library of Medicine
Comparative genomics
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License
Standard Youtube License
CGR helps maximize the full potential of eukaryotic research organisms and their genomic data through community collaboration, and an NCBI Toolkit of interco...
Authors
National Library of Medicine
Comparative genomics
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License
Standard Youtube License
The Armenian Bioinformatics Institute (ABI, https://abi.am), in collaboration with the Bioinformatics Group at the Institute of Molecular Biology (IMB) NAS RA, has initiated an annual series of summer schools in genome bioinformatics. To extend the reach of these efforts, we have compiled the materials from these schools into this guide. This guide provides you with the foundational knowledge and skills needed to embark on your first bioinformatics project. While this is not an exhaustive resource, it serves as a starting point, equipping you with the tools and inspiration to pursue further education in this dynamic field
Authors
Aleksey Kurnosov, Vahan Huroyan, Susanna Avagyan, Maria Nikoghosyan, Lilit Nersisyan
R Python RNA-seq Genomics
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License
Other open
EMBL-EBI Train online course
Authors
Laura Huerta, Melissa Burke, Flaminia Zane
Functional Genomics Genomics Next generation sequencing RNA-seq Pathways and Networks Epigenetics
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License
Creative Commons Attribution-NonCommercial 4.0
The playlist gathers the videos recorded during the SIB course “NGS - Genome Variant Analysis” streamed on 05-06 Sep 2023. In this two-day course we will cov...
Authors
Geert van Geest
Variant analysis Genome annotation
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License
Creative Commons Attribution 4.0
This talk was recorded live during the SIB course “ Reproducible Research and Data Analysis using Nextflow Pipelines” (https://www.sib.swiss/training/course/...
Authors
Dr. Cedric Notredame and Dr. Jose Espinosa-Carrasco
Nextflow
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License
Creative Commons Attribution 4.0
This collection of videos was recorded live during the SIB course “Docker and Singularity for reproducible research: getting started with containers” streame...
Authors
Dr. Geert van Geest
Docker Singularity
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License
Creative Commons Attribution 4.0
This talk was recorded live on 24 May 2023 as part of the course «Introduction to Bayesian Statistics with R». This 3-day course introduced participants to ...
Authors
Timothy Vaughan
Phylogenetics / Phylogenomics Statistics
Days since last push
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License
Creative Commons Attribution 4.0

About

The ERGA Knowledge Hub is a list of training material and resources related to biomaterial sampling, reference genome generation, analysis, teaching, and legal and ethical aspects, curated by the community of the European Reference Genome Atlas. This initiative was made possible thanks to Biodiversity Genomics Europe (BGE) funded by the European Union under the Horizon Europe research and innovation program, co-funded by the Swiss and British governments.

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  • Free to use with accreditation

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Developed, maintained and curated by:

Yann Haefliger
Tom Brown
Diego De Panis
Luísa Marins
Christian de Guttry

Data last updated: 2025-04-21 01:03:23

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